PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002201-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 242aa    MW: 25839.9 Da    PI: 8.0911
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002201-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001591113123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k F +   L  H  +H
  NNU_002201-RA  91 YKCTVCNKAFGSYQALGGHKASH 113
                    9*********9999998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01891113IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9191113IPR007087Zinc finger, C2H2
PfamPF139124.5E-1391115IPR007087Zinc finger, C2H2
SuperFamilySSF576672.42E-991166No hitNo description
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
PfamPF139121.4E-13143168IPR007087Zinc finger, C2H2
SMARTSM003550.19144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411144166IPR007087Zinc finger, C2H2
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MALEALNSPR TATPSLHYDD MDLHCLEPWA KRKRTKRPRL ENPPTEEEYL ALCLIMLARG  60
GAGATISGGG ALSNHRIHSP PPPPPALKLN YKCTVCNKAF GSYQALGGHK ASHRKLTGND  120
DQSSSSTTTT TTTSSTVNPG GRTHECSICH KSFPTGQALG GHKRCHYDGG NTNSSVTLSS  180
DAAAPSHSLR GFDLNLPALP EFNGAVGGKK SEIFGEEEVE SPLPMKKPRL LIPADETSSQ  240
DQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272343.11e-180PREDICTED: zinc finger protein ZAT10
SwissprotQ962898e-63ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA5BBP68e-91A5BBP6_VITVI; Putative uncharacterized protein
TrEMBLF6H6638e-91F6H663_VITVI; Putative uncharacterized protein
STRINGVIT_03s0091g00690.t012e-90(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-55salt tolerance zinc finger